This descriptive study aims identify the perceived issues and challenges among physical education teachers on students development. It sought to determine the level of issues and challenges in teaching and learning, level of issues and challenges in school environment, level of students cognitive development, level of students self-regulation development, significant relationship between the issues and challenges in teaching and learning and the students cognitive development and significant relationship between the issues and challenges in teaching and learning and the students self-regulation. The following were the significant findings of the investigation: Finding shows that the level of issues and challenges in teaching in learning in terms of effective communication, students conditioning, students participation which appears to have a be a very great extent obtaining an overall mean of 4.55, 4.55 and 4.54 respectively. It can imply that even though there are challenges that teacher may experience still they are able to manage it positively. Next, level of issues and challenges in school environment in terms of awareness on guidelines, safety protocols, readiness of facilities and safe facilities and provision of safe environment also on the very great extent with an overall mean of 4.49, 4.62, 4.52 and 4.55. It can infer that challenges on the safe environment may occur due to the protocols related with the pandemic, however, school and teachers are still able to produce conducive facilities for the learners. Another, level of students cognitive development in terms of information processing, reasoning and language development appears to be very great extent as it got an overall mean of 4.64, 4.53, 4.62 respectively which can infer that students cognitive development are on a positive state. Study also shows that  the level of students self-regulation development in terms of sense of responsibility, self-reliance, self-awareness, sense of purpose and performance skills and abilities   are very great extent which obtains an overall mean of 4.63, 4.58, 4.65 and 4.65 respectively which can imply that students are also able to manage and regulate their own learnings. Lastly, the result of the study shows that issues and challenges in the on the teaching, learning and school environment is significantly related on the students cognitive development and self-regulation. It can imply that these challenges have a huge contribution on the behaviour and leaning of the students.